Two people, including a teenage boy, were shot aboard a moving subway car in Brooklyn during the evening rush hour Tuesday, police said.

Bullets flew through a Manhattan-bound C train at around 5:40 p.m. — striking both a 17-year-old boy and a 52-year-old man — after a fight broke out among straphangers, according to cops and sources.

The teen was shot once in the right hand and the man was struck in the ankle, police said.

The northbound train was held at the next station, Ralph Avenue, in Ocean Hill until officers and paramedics arrived.

EMS rushed the teen to Bellevue Hospital and the older victim to Kings County Hospital. Both were listed in stable condition, according to the NYPD.

The gunman fled the scene and remains at large.

It’s unclear if both victims were intended targets. The investigation is ongoing.

The shooting caused a messy commute, as C trains ran express for the next two hours, skipping stops including Ralph Avenue, as police investigated the scene.

By 7:40 p.m., C trains resumed making local stops but were still running with delays, according to the MTA.