The digging means "the rails can subside and then the safety of train traffic can no longer be guaranteed," ProRail, the company that maintains the Dutch rail network said in a statement.
Earlier this month, badgers also burrowed under tracks near the northern village of Molkwerum in Friesland province, knocking a line out of service until next month while workers seek permission to shift the animals.
Badgers are protected animals in the Netherlands, so rail operators have to get permission to move them or disturb their habitat before repairs can begin.
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Two badger cubs are seen in the Szeged Game Park in Szeged, south of Budapest, Hungary, on April 12, 2006. (Gyoergy Nemeth, File/MTI via AP, File)
John Voppen, CEO of ProRail, the company that maintains Dutch railroads, appealed for a speeding up of the procedures.
"In the interests of travelers and carriers, more space is needed to be able to take action more quickly," he said in a statement. "We are of course in urgent consultation with the Ministry of Infrastructure and Water Management about this."
ProRail says that badgers like digging into the steep sides of earthen dikes that carry many Dutch train tracks. That can cause the tracks to subside, endangering trains.
"Living together with badgers can be a real puzzle," the company said on its website.